HIGHPrivileged sudo commandscripts/install_dependencies.sh:11 · Privileged sudo command — agent may execute with elevated privilegesFix: Build commands from fixed arguments; do not interpolate untrusted strings into a shell.
AST05 HIGHPrivileged sudo commandscripts/install_dependencies.sh:12 · Privileged sudo command — agent may execute with elevated privilegesFix: Build commands from fixed arguments; do not interpolate untrusted strings into a shell.
AST05 HIGHPrivileged sudo commandscripts/install_dependencies.sh:25 · Privileged sudo command — agent may execute with elevated privilegesFix: Build commands from fixed arguments; do not interpolate untrusted strings into a shell.
AST05 MEDIUMFile type combined with upload actionSKILL.md:286 · File type combined with upload action — agent may exfiltrate local data filesFix: Remove the call, or declare the host in frontmatter and explain in the README what is sent and why.
AST07 MEDIUMFile type combined with upload actionscripts/format_cytoscape.py:4 · File type combined with upload action — agent may exfiltrate local data filesFix: Remove the call, or declare the host in frontmatter and explain in the README what is sent and why.
AST07 MEDIUMPython subprocess execution detectedscripts/predict_targets_genome.py:774 · Python subprocess execution detectedFix: Build commands from fixed arguments, never from interpolated strings; prefer an API client over shelling out.
AST05 MEDIUMFile type combined with upload actionSKILL.md:198 · File type combined with upload action — agent may exfiltrate local data filesFix: Remove the call, or declare the host in frontmatter and explain in the README what is sent and why.
AST07 MEDIUMPython subprocess execution detectedscripts/conservation_analysis.py:551 · Python subprocess execution detectedFix: Build commands from fixed arguments, never from interpolated strings; prefer an API client over shelling out.
AST05 MEDIUMFile type combined with upload actionSKILL.md:230 · File type combined with upload action — agent may exfiltrate local data filesFix: Remove the call, or declare the host in frontmatter and explain in the README what is sent and why.
AST07 MEDIUMPython subprocess execution detectedscripts/conservation_analysis.py:533 · Python subprocess execution detectedFix: Build commands from fixed arguments, never from interpolated strings; prefer an API client over shelling out.
AST05 MEDIUMFile type combined with upload actionSKILL.md:228 · File type combined with upload action — agent may exfiltrate local data filesFix: Remove the call, or declare the host in frontmatter and explain in the README what is sent and why.
AST07 HIGHPrivileged sudo commandscripts/install_r_deps.sh:21 · Privileged sudo command — agent may execute with elevated privilegesFix: Build commands from fixed arguments; do not interpolate untrusted strings into a shell.
AST05 MEDIUMFile type combined with upload actionSKILL.md:197 · File type combined with upload action — agent may exfiltrate local data filesFix: Remove the call, or declare the host in frontmatter and explain in the README what is sent and why.
AST07 MEDIUMFile type combined with upload actionscripts/targetscan_predict.py:4 · File type combined with upload action — agent may exfiltrate local data filesFix: Remove the call, or declare the host in frontmatter and explain in the README what is sent and why.
AST07 MEDIUMPython subprocess execution detectedscripts/plot_enrichment.py:97 · Python subprocess execution detectedFix: Build commands from fixed arguments, never from interpolated strings; prefer an API client over shelling out.
AST05 MEDIUMPython subprocess execution detectedscripts/check_env.py:37 · Python subprocess execution detectedFix: Build commands from fixed arguments, never from interpolated strings; prefer an API client over shelling out.
AST05 HIGHPrivileged sudo commandscripts/install_r_deps.sh:32 · Privileged sudo command — agent may execute with elevated privilegesFix: Build commands from fixed arguments; do not interpolate untrusted strings into a shell.
AST05 HIGHPrivileged sudo commandscripts/install_r_deps.sh:7 · Privileged sudo command — agent may execute with elevated privilegesFix: Build commands from fixed arguments; do not interpolate untrusted strings into a shell.
AST05 MEDIUMPython subprocess execution detectedscripts/plot_enrichment.py:130 · Python subprocess execution detectedFix: Build commands from fixed arguments, never from interpolated strings; prefer an API client over shelling out.
AST05 MEDIUMPython subprocess execution detectedscripts/miranda_predict.py:29 · Python subprocess execution detectedFix: Build commands from fixed arguments, never from interpolated strings; prefer an API client over shelling out.
AST05 MEDIUMPython subprocess execution detectedscripts/check_env.py:44 · Python subprocess execution detectedFix: Build commands from fixed arguments, never from interpolated strings; prefer an API client over shelling out.
AST05 MEDIUMPython subprocess execution detectedscripts/predict_targets_genome.py:458 · Python subprocess execution detectedFix: Build commands from fixed arguments, never from interpolated strings; prefer an API client over shelling out.
AST05 HIGHPrivileged sudo commandscripts/install_dependencies.sh:31 · Privileged sudo command — agent may execute with elevated privilegesFix: Build commands from fixed arguments; do not interpolate untrusted strings into a shell.
AST05 HIGHPrivileged sudo commandscripts/install_dependencies.sh:52 · Privileged sudo command — agent may execute with elevated privilegesFix: Build commands from fixed arguments; do not interpolate untrusted strings into a shell.
AST05 HIGHPrivileged sudo commandscripts/install_r_deps.sh:34 · Privileged sudo command — agent may execute with elevated privilegesFix: Build commands from fixed arguments; do not interpolate untrusted strings into a shell.
AST05 MEDIUMPython subprocess execution detectedscripts/targetscan_predict.py:30 · Python subprocess execution detectedFix: Build commands from fixed arguments, never from interpolated strings; prefer an API client over shelling out.
AST05 MEDIUMPython subprocess execution detectedscripts/predict_targets_genome.py:405 · Python subprocess execution detectedFix: Build commands from fixed arguments, never from interpolated strings; prefer an API client over shelling out.
AST05